Scientific information ressources

PhD research is more and more done outsite the wetlab with the help of useful scientifuc and academic databses.

Protocols for Biomecical research

1. National Center for Biotechnology Information (NCBI)
2. Biomolecular & Biochemical Databases (Sequences, Structures, etc)
3. Educational Resources  
4. Free online journals: HighWire Press
5. Protocol Online (large collection of protocols)
6. Molecular Biology Protocols and Downloads
7. Molecular Biology Problem Sets & Tutorials
8. Restriction Fragment Length Polymorphisms (RFLPs)
9. Web Tools for Molecular Biologists
10. Dictionary of Cell Biology
11. Immunology
12. BioExchange
13. Bio Netbook
14. Biology Online
15. BioOnline
16. Biosciences Virtual Library
17. The Bio-Web
18. Microarray data analysis
19. Cell & Molecular Biology Online
20. ExPASy
21. Molecular Biology Resources
22. Molecular Biology Toolbox
23. National Institutes of Health
24. Biological databases
25. Cytokines
26. Macromolecular Structure Database
27. Atlas of Side-Chain and Main-Chain Hydrogen Bonding
28. EMBL Data Library
29. Java based Molecular Biologists Workbench (JaMBW)
30. Bio-wURLd, URL’s for bioinformatics, biochemistry, and molecular biology
31. PredictProtein — protein structural predictions from sequence data
32. FSSP: Fold classification based on Structure-Structure alignment of Proteins
33. U.S. Environmental Protection Agency (EPA)
34. Fisher Scientific On-Line Catalog
35. Fred Hutchinson Cancer Research Center
36. BLOCKS Server
37. ProDom Database of Protein Domains
38. Gene Quantification: quantitative gene expression analysis using real-time (RT-) PCR
39. SwissProt protein database
40. Swiss-2DPAGE – 2D protein gel database
41. World-3DPAGE, a listing of 2D protein gel databases
42. Swiss-Model: Automated Protein Modelling Server
43. List of On-line and Email Molecular Biology Services
44. Center for Biomedical and Biophysical Technologies (CITBB)
45. GenomeNet
46. Kyoto Encylopaedia of Genes and Genomes (KEGG)
47. GibcoBRL Life Technologies
48. Internet Directory of Biotechnology Resources
49. International Institute of Genetics and Biophysics
50. Invitrogen
51. Image Library of Biological Macromolecules
52. The RNA World
53. LabVelocity
54. Large Scale Biology Corporation
55. 2DE Protein Electrophoresis
56. Design-it-yourself Glycolysis, a tecahing aid for biochemistry
57. Martinsried Institute for Protein Sequences
58. HyperTextbook on Cellular & Molecular Biology
59. Whitehead Institute for Biomedical Research
60. MIT Center for Genome Research
61. RasMol HomePage
62. Material Safety Data Sheets (MSDS)
63. McGill University: Department of Biochemistry
64. Tutorials in Biochemistry
65. Protocols in Biochemistry, Molecular Biology and Cell Biology
66. Biocatalysis/Biodegradation Database
67. Mintz Levin (biotech patent law)
68. Molbiol.net (Portal for Molecular Biology Tools on the Net)
69. Molecular Probes
70. Molecular Properties Prediction
71. Molecular Simuations Inc.
72. Molecular Station
73. Image Processing Section (IPS)
74. Information Theory and Molecular Recognition
75. Sequence Logos
76. bionet.molbio.methds-reagns FAQ
77. U.S. National Institutes of Health (NIH)
78. Molecules R Us
79. Bioinformatics and Molecular Analysis Section (BIMAS)
80. GenBank
81. NIH Guide to Grants and Contracts (from NYU Medical Center)
82. U.S. National Institutes of Standards and Technology (NIST)
83. Molecular Biology Protocols
84. Nature Biotechnology
85. U.S. National Science Foundation
86. Operon Technologies
87. Oxford University Press
88. Pedro’s Research Tools (Molecular Biology Software Guide)
89. Molecular Biology Search and Analysis
90. Practical Molecular Biology -Protocols, bioMail and calculations
91. Promega, a supplier of molecular biology reagents
92. ProteomicsSURF
93. Molecular Biology Vector Sequence Database
94. Computational Molecular Biology
95. The Nucleic Acid Database — 3-dimensional structures of DNA and RNA
96. Salk Institute for Biological Studies
97. Motif Bioinformatics Server
98. Molecular Biotechnology Programme
99. NetBioChem, an on-line biochemistry tutorial
100. Hidden Markov models of protein and DNA sequences
101. The World Lecture Hall — on-line courses and courseware
102. WWW.Biochemistry
103. BioGeoscience
104. Biodiversity and Ecology
105. Bioinformatics: Bioinformatics Resource Bioinformatik.de
106. Botany
107. Biotechnology
108. Developmental Biology
109. Genetics
110. Veterinary Medicine
111. Neurobiology
112. Physiology and Biophysics  
113. The WWW Virtual Library: Biochemistry and Molecular Biology (A Recombinant DNA Course)
114. Virtual Fly Lab

Search tools

1. BioChem Links
2. BioTechFind
3. Links2Go: Biology
4. Addgene 
5. NCBI Entrez
6. Protein Data Bank
7. The “Universal” Genetic Code HTML Table
8. Periodic Table of the Elements
9. Submit your DNA sequence to GenBank with BankIt to GenBank
10. Material Safety Data Sheets (MSDS)
11. Vector db — a sequence database of recombinant DNA vectors
12. Codon Usage Tables for >450 species!

Databases

1. Arabidopsis — AAtDB
2. Arabidopsis Ds Mapping Project
3. C.elegans
4. Drosophila — FlyBase
5. Human: Genome Data Base & On-line Mendelian Inheritance in Man
6. Mouse: Genevestigator Mouse Genome Informatics, Jackson Labratory Portable Dictionary of the Mouse Genome
7. Prokaryotes: Bacillus subtilis –Subtilist, NRSub Escherichia coli Institut Pasteur’sColibri Stocks (CGSC) E.coli Data Collection (ECDC) dam, dcm and mut strainsHaemophilus HIDB M. tuberculosis
8. XREFdb a model organism genetics cross-reference
9. Yeasts — Saccharomyces Genome Project
10. Zebrafish

Softwares

1. The Bio-Access Guide to the Internet, a directory of molecular biology software
2. WebCutter — DNA restriction site analysis
3. BioCatalog of molecular biology/genetics software
4. Genamics’ SoftwareSeek
5. List of On-line and E-mail Molecular Biology Services